Bacter Tutorial
Inferring ARGs from bacterial sequence data.
Tim Vaughan
Updated 21 Jun 2018 by tgvaughan
Calibrated Species Trees
Estimating species divergence times using StarBEAST2
Huw A. Ogilvie
Updated 2 Feb 2017 by Unknown
CladeAge Tutorial
Fossil-based divergence-time estimation with CladeAge
Michael Matschiner
Updated 21 Feb 2019 by mmatschiner
Divergence Time Estimation
Dating Species Divergences with the Fossilized Birth-Death Process
Tracy A. Heath , Rachel Warnock and Bethany J. Allen
Updated 11 Aug 2023 by laduplessis
Estimating Reassortment Networks with CoalRe
Estimating Reassortment Networks with CoalRe
Nicola F. Müller
Updated 1 Apr 2022 by tgvaughan
MASCOT v3.0.0 Tutorial
Parameter and State inference using the approximate structured coalescent
Nicola F. Müller
Updated 9 Jun 2023 by tgvaughan
Model selection
Model selection with nested sampling
Remco Bouckaert
Updated 24 Mar 2019 by rbouckaert
Molecular dating using heterochronous data and substitution model averaging
Estimating the time of origin of the 2009 H1N1 pandemic in North America
Sebastian Duchene , Tim Vaughan and Veronika Boskova
Updated 5 Nov 2018 by tgvaughan
PIQMEE Tutorial
How to efficiently analyze large data sets containing duplicates
Veronika Bošková
Updated 28 Feb 2022 by boskovav
Species Trees and Species Delimitation with SNAPPER
Analyzing SNP or AFLP data
Adam Leaché and Remco Bouckaert
Updated 15 Apr 2024 by bjoelle
StarBEAST2 v1.0.0 tutorial
Estimating species trees using StarBEAST2
Huw A. Ogilvie
Updated 15 Aug 2023 by Unknown
StarBeast Tutorial
Estimating species tree from multilocus sequence data
Joseph Heled , Remco Bouckaert , Walter Xie , Alexei J. Drummond and Chi Zhang
Updated 2 Feb 2017 by laduplessis
Substitution model averaging
A tutorial using bModelTest
David A. Rasmussen , Carsten Magnus and Remco Bouckaert
Updated 24 Jul 2023 by laduplessis
The ClaDS package
Inferring progressive changes in birth and death rates
Joëlle Barido-Sottani
Updated 18 Dec 2023 by Unknown
The MSBD package
Inferring lineage-dependent birth and death rates
Joëlle Barido-Sottani
Updated 20 Jul 2023 by bjoelle

If you found Taming the BEAST helpful in designing your research, please cite the following paper:

Joëlle Barido-Sottani, Veronika Bošková, Louis du Plessis, Denise Kühnert, Carsten Magnus, Venelin Mitov, Nicola F. Müller, Jūlija Pečerska, David A. Rasmussen, Chi Zhang, Alexei J. Drummond, Tracy A. Heath, Oliver G. Pybus, Timothy G. Vaughan, Tanja Stadler (2018). Taming the BEAST – A community teaching material resource for BEAST 2. Systematic Biology, 67(1), 170–-174. doi: 10.1093/sysbio/syx060