Tutorials

All tutorials on Taming the BEAST, including the tutorial source code, markdown files (.md), compiled LaTeX tutorials (.pdf) and figures within the tutorials are freely available under a Creative Commons Attribution 4.0 license, unless otherwise stated.

Website source code

This website is based on Trevor Bedford’s lab website and was built from a fork of the GitHub repository. All source code in this website repository, consisting of files with extensions .html, .css, .less, .rb or .js, is freely available under an MIT license, unless otherwise noted within a file. You’re welcome to borrow / repurpose code to build your own site, but we would very much appreciate attribution and a link back to taming-the-beast.github.io from your about page.

Citation

The citation for the Taming the BEAST community resource is:

Joëlle Barido-Sottani, Veronika Bošková, Louis du Plessis, Denise Kühnert, Carsten Magnus, Venelin Mitov, Nicola F. Müller, Jūlija Pečerska, David A. Rasmussen, Chi Zhang, Alexei J. Drummond, Tracy A. Heath, Oliver G. Pybus, Timothy G. Vaughan, Tanja Stadler (2017). Taming the BEAST – A community teaching material resource for BEAST 2. Systematic Biology, syx060. doi: 10.1093/sysbio/syx060

The citation for BEAST2 is:

Remco Bouckaert, Joseph Heled, Denise Kühnert, Tim Vaughan, Chieh-Hsi Wu, Dong Xie, Marc A. Suchard, Andrew Rambaut, Alexei J. Drummond (2014). BEAST 2: A Software Platform for Bayesian Evolutionary Analysis. PLoS Computational Biology, 10(4), e1003537. doi: 10.1371/journal.pcbi.100353